Sequences from an assembly, see Extracting sequence in batch from anįor more information on using the UCSC DAS server, see Downloading data fromĪnother option for querying sequence and annotation data is the REST API. For information on extracting a large set of To download a specific subset of theĭata or to configure the output format of the data, use the Please see the previous link for examples.ĭAS server. Server, but we recommend using rsync, which has the advantage of starting up where it left offĪfter a failure, when run again.

You can download sequence and annotation data using our FTP Incorporate additions and modifications to the data. The download directories are automatically updated nightly to Sequence and annotation data downloads are usually made available within the first week of the Return to FAQ Table of Contents Downloading sequence and annotation data How do I obtain the sequence and/or annotation data for a release? 'Permisssion denied' error when trying to use command-line utilities.Known issues with Table Browser GTF output.Mapping UCSC STS marker IDS to those of other groups.Minus strand coordinates - axtNet files.Data from Evolutionary Conservation Score tracks.RepeatMasker version differences - UCSC vs.Linking gene name with accession number.Converting genome coordinates between assemblies.Mapping chimp chromosome numbers to human chromosomes numbers.Erroneous duplicated chrY_random region on Mouse Build 34 (mm6).N characters at beginning of human chr22.

Data differences between downloaded data and browser display.

Downloading the UCSC Genome Browser source.

Downloading data from the UCSC DAS server.

Extracting sequence in batch from an assembly.

Metadata tables for GenBank and RefSeq moved to hgFixed database.

Downloading sequence and annotation data.

Frequently Asked Questions: Data and Downloads Topics

Using tor browser ucsc